Forensic Science International: Genetics
Volume 2, Issue 3 , Pages 176-183 , June 2008

Forensic typing of autosomal SNPs with a 29 SNP-multiplex—Results of a collaborative EDNAP exercise

  • J.J. Sanchez

      Affiliations

    • Section of Forensic Genetics, Department of Forensic Medicine, Faculty of Health Sciences, University of Copenhagen, 11 Frederik V's Vej, DK-2100 Copenhagen, Denmark
    • National Institute of Toxicology and Forensic Sciences, Canary Islands Delegation, Spain
    • ,
  • C. Børsting

      Affiliations

    • Section of Forensic Genetics, Department of Forensic Medicine, Faculty of Health Sciences, University of Copenhagen, 11 Frederik V's Vej, DK-2100 Copenhagen, Denmark
    • ,
  • K. Balogh

      Affiliations

    • Institute of Legal Medicine, Johannes Gutenberg University, Mainz, Germany
    • ,
  • B. Berger

      Affiliations

    • Institute of Legal Medicine, Innsbruck Medical University, Austria
    • ,
  • M. Bogus

      Affiliations

    • Institute of Legal Medicine, Johannes Gutenberg University, Mainz, Germany
    • ,
  • J.M. Butler

      Affiliations

    • National Institute of Standards and Technology, Gaithersburg, MD, USA
    • ,
  • A. Carracedo

      Affiliations

    • Institute of Legal Medicine, University of Santiago de Compostela, Spain
    • ,
  • D. Syndercombe Court

      Affiliations

    • Centre for Haematology, Queen Mary's School of Medicine and Dentistry, London, UK
    • ,
  • L.A. Dixon

      Affiliations

    • The Forensic Science Service, Research and Development, Trident Court, Birmingham, UK
    • ,
  • B. Filipović

      Affiliations

    • International Commission on Missing Persons, Sarajevo, Bosnia and Herzegovina
    • ,
  • M. Fondevila

      Affiliations

    • Institute of Legal Medicine, University of Santiago de Compostela, Spain
    • ,
  • P. Gill

      Affiliations

    • The Forensic Science Service, Research and Development, Trident Court, Birmingham, UK
    • ,
  • C.D. Harrison

      Affiliations

    • Centre for Haematology, Queen Mary's School of Medicine and Dentistry, London, UK
    • ,
  • C. Hohoff

      Affiliations

    • Institut für Rechtsmedizin, Universitätsklinikum Münster, Germany
    • ,
  • R. Huel

      Affiliations

    • International Commission on Missing Persons, Sarajevo, Bosnia and Herzegovina
    • ,
  • B. Ludes

      Affiliations

    • Institut de Médicine Legale, Strasbourg, France
    • ,
  • W. Parson

      Affiliations

    • Institute of Legal Medicine, Innsbruck Medical University, Austria
    • ,
  • T.J. Parsons

      Affiliations

    • International Commission on Missing Persons, Sarajevo, Bosnia and Herzegovina
    • ,
  • E. Petkovski

      Affiliations

    • Institut de Médicine Legale, Strasbourg, France
    • ,
  • C. Phillips

      Affiliations

    • Institute of Legal Medicine, University of Santiago de Compostela, Spain
    • ,
  • H. Schmitter

      Affiliations

    • Bundeskriminalamt, Wiesbaden, Germany
    • ,
  • P.M. Schneider

      Affiliations

    • Institute of Legal Medicine, University of Cologne, Germany
    • ,
  • P.M. Vallone

      Affiliations

    • National Institute of Standards and Technology, Gaithersburg, MD, USA
    • ,
  • N. Morling

      Affiliations

    • Section of Forensic Genetics, Department of Forensic Medicine, Faculty of Health Sciences, University of Copenhagen, 11 Frederik V's Vej, DK-2100 Copenhagen, Denmark
    • Corresponding Author InformationCorresponding author.

Received 1 October 2007 ,Accepted 5 December 2007.

References 

  1. Sachidanandam R, et al. A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature. 2001;409:928–933
  2. Anderson EC, Garza JC. The power of single-nucleotide polymorphisms for large-scale parentage inference. Genetics. 2006;172:2567–2582
  3. Børsting C, Sanchez JJ, Morling N. Multiplex PCR, amplicon size and hybridization efficiency on the NanoChip electronic microarray. Int. J. Legal Med. 2004;118:75–82
  4. Sanchez JJ, Phillips C, Borsting C, Balogh K, Bogus M, Fondevila M, et al. A multiplex assay with 52 single nucleotide polymorphisms for human identification. Electrophoresis. 2006;27:1713–1724
  5. Gill P. An assessment of the utility of single nucleotide polymorphisms (SNPs) for forensic purposes. Int. J. Legal Med. 2001;114:204–210
  6. Schneider PM, Balogh MK, Naveran N, Bogus M, Bender K, Lareu M, et al. Whole genome amplification—the solution for a common problem in forensic casework?. In:  Dutremépuich C,  Morling N editor. Progress in Forensic Genetics 10. ICS International Congress Series, vol. 1261. Elsevier, Amsterdam. 2004;p. 24–26
  7. Bergen AW, Qi Y, Haque KA, Welch RA, Chanock SJ. Effects of DNA mass on multiple displacement whole genome amplification and genotyping performance. BMC Biotechnol. 2005;5:24
  8. Butler JM, Shen Y, McCord BR. The development of reduced size STR amplicons as tools for analysis of degraded DNA. J. Forensic Sci. 2003;48:1054–1064
  9. Schneider PM, Bender K, Mayr WR, Parson W, Hoste B, Decorte R, et al. STR analysis of artificially degraded DNA-results of a collaborative European exercise. Forensic Sci. Int. 2004;139:123–134
  10. Dixon LA, Dobbins AE, Pulker HK, Butler JM, Vallone PM, Coble MD, et al. Analysis of artificially degraded DNA using STRs and SNPs—results of a collaborative European (EDNAP) exercise. Forensic Sci. Int. 2006;164:33–44
  11. Tukey JW. Exploratory Data Analysis. Boston: Addison-Wesley Publishing Co.; 1977;
  12. van den Oord EJ, Jiang Y, Riley BP, Kendler KS, Chen X. FP-TDI SNP scoring by manual and statistical procedures: a study of error rates and types. Biotechniques. 2003;34:610–620
  13. Magnuson VL, Ally DS, Nylund SJ, Karanjawala ZE, Rayman JB, Knapp JI, et al. Substrate nucleotide-determined non-templated addition of adenine by Taq DNA polymerase: implications for PCR-based genotyping and cloning. Biotechniques. 1996;21:700–709

PII: S1872-4973(07)00405-X

doi: 10.1016/j.fsigen.2007.12.002

Forensic Science International: Genetics
Volume 2, Issue 3 , Pages 176-183 , June 2008

Article Tools

* Image Usage & Resolution