Forensic Science International: Genetics
Volume 3, Issue 2 , Pages 67-73 , March 2009

Species identification using the cytochrome b gene of commercial turtle shells

  • James Chun-I. Lee

      Affiliations

    • Department of Forensic Medicine, College of Medicine, National Taiwan University, No.1 Jen-Ai Road Section 1, Taipei 10051, Taiwan, ROC
  • ,
  • Li-Chin Tsai

      Affiliations

    • Department of Forensic Science, Central Police University, 56 Shu-Jen Road, Kwei-San, Taoyuan 33334, Taiwan, ROC
  • ,
  • Shu-Ping Liao

      Affiliations

    • Department of Forensic Science, Central Police University, 56 Shu-Jen Road, Kwei-San, Taoyuan 33334, Taiwan, ROC
  • ,
  • Adrian Linacre

      Affiliations

    • Centre for Forensic Science, Department of Pure & Applied Chemistry, WestCHEM, University of Strathclyde, Glasgow G1 1XW, United Kingdom
  • ,
  • Hsing-Mei Hsieh

      Affiliations

    • Department of Forensic Science, Central Police University, 56 Shu-Jen Road, Kwei-San, Taoyuan 33334, Taiwan, ROC
    • Corresponding Author InformationCorresponding author. Tel.: +886 3 3282321X4875; fax: +886 3 3275907.

Received 9 June 2008 ,Revised 9 October 2008 ,Accepted 14 October 2008.

References 

  1. Hsieh HM, Huang LH, Tsai LC, Liu CL, Kuo YC, Hsiao CT, et al. Species Identification of Kachuga tecta using the cytochrome b gene. J. Forensic Sci. 2006;51:52–56
  2. Wu P, Zhou K, Xu L, Teng J. Molecular identification of the Chinese drug turtle shells. Yao Xue Xue Bao. 1998;33:304–309
  3. van der Kuyl AC, Ph Ballasina DL, Dekker JT, Maas J, Willemsen RE, Goudsmit J. Phylogenetic relationships among the species of the genus Testudo (Testudines: Testudinidae) inferred from mitochondrial 12S rRNA gene sequences. Mol. Phylogenet. Evol. 2002;22:174–183
  4. Austin JJ, Arnold EN. Ancient mitochondrial DNA and morphology elucidate an extinct island radiation of Indian Ocean giant tortoises (Cylindraspis). Proc. R. Soc. Lond. B. Biol. Sci. 2001;268:2515–2523
  5. Osentoski MF, Lamb T. Intraspecific phylogeography of the gopher tortoise. Gopherus polyphemus: RFLP analysis of amplified mtDNA segments. Mol. Ecol. 1995;4:709–718
  6. Caccone A, Amato G, Gratry OC, Behler J, Powell JR. A molecular phylogeny of four endangered Madagascar tortoises based on mtDNA sequences. Mol. Phylogenet. Evol. 1999;12:1–9
  7. Quinn TW, Mindell DP. Mitochondrial gene order adjacent to the control region in crocodile, turtle, and tuatara. Mol. Phylogenet. Evol. 1996;5:344–351
  8. Zardoya R, Meyer A. Cloning and characterization of a microsatellite in the mitochondrial control region of the African side-necked turtle, Pelomedusa subrufa. Gene. 1998;216:149–153
  9. Zardoya R, Meyer A. Complete mitochondrial genome suggests diapsid affinities of turtles. Proc. Natl. Acad. Sci. USA. 1998;95:14226–14231
  10. Lenk P, Fritz U, Joger U, Wink M. Mitochondrial phylogeography of the European pond turtle, Emys orbicularis (Linnaeus 1758). Mol. Ecol. 1999;8:1911–1922
  11. Weisrock DW, Janzen FJ. Comparative molecular phylogeography of North American softshell turtles (Apalone): implications for regional and wide-scale historical evolutionary forces. Mol. Phylogenet. Evol. 2000;14:152–164
  12. Bowen BW, Clark AM, Abreu-Grobois FA, Chaves A, Reichart HA, Ferl RJ. Global phylogeography of the ridley sea turtles (Lepidochelys spp.) as inferred from mitochondrial DNA sequences. Genetica. 1997;101:179–189
  13. Bowen BW, Nelson WS, Avise JC. A molecular phylogeny for marine turtles: trait mapping, rate assessment, and conservation relevance. Proc. Natl. Acad. Sci. USA. 1993;90:5574–5577
  14. Alvarez Y, Mateo JA, Andreu AC, Diaz-Paniagua C, Diez A, Bautista JM. Mitochondrial DNA haplotyping of Testudo graeca on both continental sides of the Straits of Gibraltar. J. Hered. 2000;91:39–41
  15. Cao Y, Sorenson MD, Kumazawa Y, Mindell DP, Hasegawa M. Phylogenetic position of turtles among amniotes: evidence from mitochondrial and nuclear genes. Gene. 2000;259:139–148
  16. Serb JM, Phillips CA, Iverson JB. Molecular phylogeny and biogeography of Kinosternon flavescens based on complete mitochondrial control region sequences. Mol. Phylogenet. Evol. 2001;18:149–162
  17. FitzSimmons NN, Moritz C, Limpus CJ, Pope L, Prince R. Geographic structure of mitochondrial and nuclear gene polymorphisms in Australian green turtle populations and male-biased gene flow. Genetics. 1997;147:1843–1854
  18. Seddon JM, Georges A, Baverstock PR, McCord W. Phylogenetic relationships of chelid turtles (Pleurodira: Chelidae) based on mitochondrial 12S rRNA gene sequence variation. Mol. Phylogenet. Evol. 1997;7:55–61
  19. Dutton PH, Davis SK, Guerra T, Owens D. Molecular phylogeny for marine turtles based on sequences of the ND4-leucine tRNA and control regions of mitochondrial DNA. Mol. Phylogenet. Evol. 1996;5:511–521
  20. Kumazawa Y, Nishida M. Complete mitochondrial DNA sequences of the green turtle and blue-tailed mole skink: statistical evidence for archosaurian affinity of turtles. Mol. Biol. Evol. 1999;16:784–792
  21. Seddon JM, Baverstock PR, Georges A. The rate of mitochondrial 12S rRNA gene evolution is similar in freshwater turtles and marsupials. J. Mol. Evol. 1998;46:460–464
  22. Bourjea J, Lapegue S, Gagnevin L, Broderick D, Mortimer JA, Ciccione S, et al. Phylogeography of the green turtle, Chelonia mydas, in the Southwest Indian Ocean. Mol. Ecol. 2007;16:175–186
  23. Naro-Maciel E, Becker JH, Lima EH, Marcovaldi MA, Desalle R. Testing dispersal hypotheses in foraging green sea turtles (Chelonia mydas) of Brazil. J. Hered. 2007;98:29–39
  24. Dethmers KE, Broderick D, Moritz C, Fitzsimmons NN, Limpus CJ, Lavery S, et al. The genetic structure of Australasian green turtles (Chelonia mydas): exploring the geographical scale of genetic exchange. Mol. Ecol. 2006;15:3931–3946
  25. Le M, Raxworthy CJ, McCord WP, Mertz L. A molecular phylogeny of tortoises (Testudines: Testudinidae) based on mitochondrial and nuclear genes. Mol. Phylogenet. Evol. 2006;40:517–531
  26. Parham JF, Feldman CR, Boore JL. The complete mitochondrial genome of the enigmatic bigheaded turtle (Platysternon): description of unusual genomic features and the reconciliation of phylogenetic hypotheses based on mitochondrial and nuclear DNA. BMC Evol. Biol. 2006;6:1–11
  27. Parham JF, Macey JR, Papenfuss TJ, Feldman CR, Turkozan O, Polymeni R, et al. The phylogeny of Mediterranean tortoises and their close relatives based on complete mitochondrial genome sequences from museum specimens. Mol. Phylogenet. Evol. 2006;38:50–64
  28. Krenz JG, Naylor GJ, Shaffer HB, Janzen FJ. Molecular phylogenetics and evolution of turtles. Mol. Phylogenet. Evol. 2005;37:178–191
  29. Parham JF, Stuart BL, Bour R, Fritz U. Evolutionary distinctiveness of the extinct Yunnan box turtle (Cuora yunnanensis) revealed by DNA from an old museum specimen. Proc. Biol. Sci. 2004;271(Suppl 6):S391–394
  30. Chassin-Noria O, Abreu-Grobois A, Dutton PH, Oyama K. Conservation genetics of the east Pacific green turtle (Chelonia mydas) in Michoacan. Mexico Genet. 2004;121:195–206
  31. Fujita MK, Engstrom TN, Starkey DE, Shaffer HB. Turtle phylogeny: insights from a novel nuclear intron. Mol. Phylogenet. Evol. 2004;31:1031–1040
  32. Stuart BL, Parham JF. Molecular phylogeny of the critically endangered Indochinese box turtle (Cuora galbinifrons). Mol. Phylogenet. Evol. 2004;31:164–177
  33. Naro-Maciel E, Becker JH, Lima EH, Marcovaldi MA, DeSalle R. Testing dispersal hypotheses in foraging green sea turtles (Chelonia mydas) of Brazil. J. Hered. 2007;98:29–39
  34. Peare T, Parker PG. Local genetic structure within two rookeries of Chelonia mydas (the green turtle). Heredity. 1996;77:619–628
  35. Valenzuela N. Multiple paternity in side-neck turtles Podocnemis expansa: evidence from microsatellite DNA data. Mol. Ecol. 2000;9:99–105
  36. Chassin-Noria O, Abreu-Grobois A, Dutton PH, Oyama K. Conservation genetics of the east Pacific green turtle (Chelonia mydas) in Michoacan, Mexico. Genetica. 2004;121:195–206
  37. Roberts MA, Schwartz TS, Karl SA. Global population genetic structure and male-mediated gene flow in the green sea turtle (Chelonia mydas): analysis of microsatellite loci. Genetics. 2004;166:1857–1870
  38. Irwin DM, Kocher TD, Wilson AC. Evolution of the cytochrome b gene of mammals. J. Mol. Evol. 1991;32:128–144
  39. Anderson S, Bankier AT, Barrel BG, de Bruijn MHL, Coulson AR, Drouin J, et al. Sequence and organization of the human mitochondrial genome. Nature. 1981;290:457–465
  40. Hsieh HM, Chiang HL, Tsai LC, Lai SY, Huang NE, Linacre A, et al. Cytochrome b gene for species identification of the conservation animals. Forensic Sci. Int. 2001;122:7–18
  41. Su B, Wang YX, Lan H, Wang W, Zhang Y. Phylogenetic study of complete cytochrome b genes in musk deer (Genus Moschus) using museum samples. Mol. Phylogenetic. Evol. 1999;12:241–249

PII: S1872-4973(08)00146-4

doi: 10.1016/j.fsigen.2008.10.005

Forensic Science International: Genetics
Volume 3, Issue 2 , Pages 67-73 , March 2009