Forensic Science International: Genetics
Volume 4, Issue 2 , Pages 104-110 , February 2010

Characterization of the highly discriminatory loci DYS449, DYS481, DYS518, DYS612, DYS626, DYS644 and DYS710

Received 29 November 2008 ,Revised 10 April 2009 ,Accepted 29 June 2009.

References 

  1. Jobling MA, Pandya A, Tyler-Smith C. The Y chromosome in forensic analysis and paternity testing. Int. J. Legal Med. 1997;110:118–124
  2. Jobling MA, Tyler-Smith C. The human Y chromosome: an evolutionary marker comes of age. Nat. Rev. Genet. 1993;598–612
  3. Kayser M, Caglià A, Corach D, Fretwell N, Gehrig C, Graziosi G, et al. Evaluation of Y-chromosomal STRs: a multicenter study. Int . J. Legal Med. 1997;110(125–133):141–149
  4. Pascali VL, Dobosz M, Brinkmann B. Coordinating Y-chromosomal STR research for the Courts. Int J. Legal Med. 1999;112:1
  5. Willuweit S, Roewer L. Y chromosome haplotype reference database YHRD: update. Forensic Sci. Int. Genet. 2007;1:83–87
  6. Leat N, Benjeddou M, Davison S. Nine-locus Y-chromosome STR profiling of Caucasian and Xhosa populations from Cape Town, South Africa. Forensic Sci. Int. 2004;144:73–75
  7. D’Amato ME, Ehrenreich L, Benjeddou M, Davison S, Leat N. Ancestry and genetic relationships between groups within the Cape Town metropolitan population inferred using Y-STRs genotyping. Forensic Sci. Int. Gene Suppl. Ser. 2008;1:318–319
  8. Leat N, Ehrenreich L, Benjeddou M, Cloete K, Davison S. Properties of novel and widely studied Y-STR loci in three South African populations. Forensic Sci. Int. 2007;168:154–161
  9. W. Rychlick. Oligo version 4. Primer analysis software. National Biosciences Inc. Plymouth, USA. Copyright 1989–1992.
  10. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997;25:3389–3402
  11. Hill CR, Kline MC, Coble MD, Butler JM. Characterization of 26 MiniSTR loci for improved analysis of degraded DNA samples. J. Forensic Sci. 2008;53:73–80
  12. Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 1999;41:95–98
  13. Gill P, Brenner C, Brinkmann B, Budowle B, Carracedo A, Jobling MA, et al. DNA Commission of the International Society of Forensic Genetics: recommendations on forensic analysis using Y-chromosome STRs. Forensic Sci. Int. 2001;124:5–10
  14. Gusmão L, Butler J, Carracedo A, Gill P, Kayser M, Mayr W, et al. DNA Commission of the International Society of Forensic Genetics (ISFG): an update of the recommendations on the use of Y-STRs in forensic analysis. Forensic Sci. Int. 2006;157:187–197
  15. Excoffier L, Laval G, Schneider S. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol. Bioinform. Online. 2005;1:47–50
  16. Goudet J. Fstat v1.2. A computer program to calculate F-statistics. J. Hered. 1995;86:485–486(updated version available at http://www2.unil.ch/popgen/softwares/fstat.htm)
  17. Nei M. Molecular Evolutionary Genetics. New York, Columbia: Masatoshi Nei; 1987;
  18. Rosenberg NA, Li LM, Ward R, Pritchard JK. Informativeness of genetic markers for inference of ancestry. Am. J. Hum. Genet. 2003;73:1402–1422
  19. Piry S, Alapetite A, Cornuet J-M, Paetkau D, Baudouin L, Estoup A, et al. A software for genetic assignment and first-generation migrant detection. J. Hered. 2004;95:536–539
  20. Paetkau D, Slade R, Burden M, Estoup A. Direct, real-time estimation of migration rate using assignment methods: a simulation-based exploration of accuracy and power. Mol. Ecol. 2004;13:55–65
  21. Paetkau D, Calvert W, Stirling I, Strobeck C. Microsatellite analysis of population structure in Canadian polar bears. Mol. Ecol. 1995;4:347–354
  22. Hill CR, Kline MC, Coble MD, Butler JM. Characterization of 26 ministr loci for improved analysis of degraded DNA samples. J. Forensic Sci. 2008;53:73–80
  23. Rodig H, Roewer L, Gross A, Richter T, de Knijff P, Kayser M, et al. Evaluation of haplotype discrimination capacity of 35 Y-chromosomal short tandem repeat loci. Forensic Sci. Int. 2008;174:182–188
  24. Yuasa I, Irizawa Y, Nakamura H, Matusue A, Umetsu K. Haplotype analysis of seven Y-STRs (eleven loci) in two Japanese populations Legal Medicine. 2008;10:316–318
  25. STR-base, http://www.cstl.nist.gov/biotech/strbase/srm2395.htm.
  26. Kayser M, Kittler R, Erler A, Hedman M, Lee AC, Mohyuddin A, et al. A comprehensive survey of human Y-chromosomal microsatellites. Am. J. Hum. Genet. 2004;74:1183–1197
  27. Redd AJ, Agellon AB, Kearne VA, Contreras VA, Karafet T, Park H, et al. Forensic value of 14 novel STRs on the human Y chromosome. Forensic Sci. Int. 2002;130:97–111
  28. Dai HL, Wang XD, Li YB, Wu J, Zhang J, Zhang HJ, et al. Characterization and haplotype analysis of 10 novel Y-STR loci in Chinese Han population. Forensic Sci. Int. 2004;145:47–55
  29. Hanson EK, Ballantyne J. Population data for 48 ‘Non-Core’ Y chromosome STR loci. Legal Med. (Tokyo). 2007;9:221–231
  30. Hanson EK, Berdos PM, Ballantyne J. Testing and evaluation of 43 “noncore” Y chromosome markers for forensic casework applications. J. Forensic Sci. 2006;51:1298–1314
  31. Bandelt H-J, Forster P, Röhl A. Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 1999;16:37–48
  32. Wilson IJ, Weale ME, Balding DJ. Inferences from DNA data: population histories, evolutionary processes and forensic match probabilities. J. Roy. Stat. Soc.: Ser. A. 2003;166:155–188

PII: S1872-4973(09)00101-X

doi: 10.1016/j.fsigen.2009.06.011

Forensic Science International: Genetics
Volume 4, Issue 2 , Pages 104-110 , February 2010