Forensic Science International: Genetics
Volume 4, Issue 5 , Pages e145-e148 , October 2010

Analysis of 14 highly informative SNP markers on X chromosome by TaqMan® SNP genotyping assay

  • Li Li

      Affiliations

    • Shanghai Key Laboratory of Forensic Medicine, Institute of Forensic Science, Ministry of Justice, PR China, Shanghai 200063, China
    • Corresponding Author InformationCorresponding author. Tel.: +86 021 52352959; fax: +86 02153352959.
    • ,
  • Chengtao Li

      Affiliations

    • Shanghai Key Laboratory of Forensic Medicine, Institute of Forensic Science, Ministry of Justice, PR China, Shanghai 200063, China
    • ,
  • Suhua Zhang

      Affiliations

    • Shanghai Key Laboratory of Forensic Medicine, Institute of Forensic Science, Ministry of Justice, PR China, Shanghai 200063, China
    • Medical School of Soochow University, Suzhou 215123, PR China
    • ,
  • Shumin Zhao

      Affiliations

    • Shanghai Key Laboratory of Forensic Medicine, Institute of Forensic Science, Ministry of Justice, PR China, Shanghai 200063, China
    • ,
  • Yan Liu

      Affiliations

    • Shanghai Key Laboratory of Forensic Medicine, Institute of Forensic Science, Ministry of Justice, PR China, Shanghai 200063, China
    • ,
  • Yuan Lin

      Affiliations

    • Shanghai Key Laboratory of Forensic Medicine, Institute of Forensic Science, Ministry of Justice, PR China, Shanghai 200063, China

Received 27 August 2009 ,Revised 26 January 2010 ,Accepted 17 April 2010.

References 

  1. De la Vega FM, Lazaruk KD, Rhodes MD, Wenz MH. Assessment of two flexible and compatible SNP genotyping platforms: TaqMan® SNP genotyping assays and the SNPlex genotyping system. Mutat. Res. 2005;573(1–2 (June 3)):111–135
  2. Krawczak M. Informativity assessment for biallelic single nucleotide polymorphisms. Electrophoresis. 1999;20(8 (June)):1676–1681
  3. Weber JL, Wong C. Mutation of human short tandem repeats. Hum. Mol. Genet. 1993;2(8 (August)):1123–1128
  4. Kruglyak L. The use of a genetic map of biallelic markers in linkage studies. Nat. Genet. 1997;17(1 (September)):21–24
  5. Walsh PS, Metzger DA, Higuchi R. Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques. 1991;10(4 (April)):506–513
  6. Botstein D, White RL, Skolnick M, Davis RW. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am. J. Hum. Genet. 1980;32(3 (May)):314–331
  7. Odelberg SJ, White R. Repetitive DNA: molecular structure, polymorphism and forensic application. In: DNA and Other Polymorphisms in Forensic Science. 1st ed.. Chicago: Year Book Medical Publishers Inc.; 1990;p. 26
  8. Edwards A, Hammond HA, Jin L, Caskey CT, Chakraborty R. Genetic variation at five trimeric and tetrameric tandem repeat loci in four human population groups. Genomics. 1992;12(2 (February)):241–253
  9. Szibor R, Krawczak M, Hering S, Edelmann J, Kuhlisch E, Krause D. Use of X-linked markers for forensic purposes. Int. J. Legal Med. 2003;117(2 (April)):67–74
  10. Zaykin D, Zhivotovsky L, Weir BS. Exact tests for association between alleles at arbitrary numbers of loci. Genetica. 1995;96(1–2):169–178
  11. Mueller JC. Linkage disequilibrium for different scales and applications. Brief Bioinform. 2004;5(4 (December)):355–364
  12. Liu K, Muse SV. PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics. 2005;21(9 (May 1)):2128–2129
  13. Szibor R. X-chromosomal markers: past, present and future. Forensic Sci. Int. Genet. 2007;1(2 (June)):93–99
  14. Sobrino B, Brión M, Carracedo A. SNPs in forensic genetics: a review on SNP typing methodologies. Forensic Sci. Int. 2005;154(2–3 (November 25)):181–194
  15. Zarrabeitia MT, Mijares V, Riancho JA. Forensic efficiency of microsatellites and single nucleotide polymorphisms on the X chromosome. Int. J. Legal Med. 2007;121(6 (November)):433–437
  16. Tomas C, Sanchez JJ, Barbaro A, Brandt-Casadevall C, Hernandez A, Ben Dhiab M, et al. X-chromosome SNP analyses in 11 human Mediterranean populations show a high overall genetic homogeneity except in north-west Africans (Moroccans). BMC Evol. Biol. 2008;8 (February 29):75
  17. Chakravarti A. Population genetics – making sense out of sequence. Nat. Genet. 1999;21(Suppl. 1 (January)):56–60

PII: S1872-4973(10)00078-5

doi: 10.1016/j.fsigen.2010.04.004

Forensic Science International: Genetics
Volume 4, Issue 5 , Pages e145-e148 , October 2010

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