Advertisement
Announcement of population data| Volume 3, ISSUE 2, e27-e28, March 2009

Download started.

Ok

Hungarian population data for 11 Y-STR and 49 Y-SNP markers

      Abstract

      49 Y-chromosomal single nucleotide polymorphisms (SNPs) with TaqMan assay and 11 Y-chromosomal STR loci were tested in 215 independent Hungarian male samples. Genetic distances to 23 other populations were calculated based on haplogroup frequencies with AMOVA implemented in Arlequin2.0. Based on distances phylogenetic tree was constructed with Neighbor-joining method using Phylip 3.66. Haplotype and haplogroup diversity values were calculated.

      Keywords

      To read this article in full you will need to make a payment

      Purchase one-time access:

      Academic & Personal: 24 hour online accessCorporate R&D Professionals: 24 hour online access
      One-time access price info
      • For academic or personal research use, select 'Academic and Personal'
      • For corporate R&D use, select 'Corporate R&D Professionals'

      Subscribe:

      Subscribe to Forensic Science International: Genetics
      Already a print subscriber? Claim online access
      Already an online subscriber? Sign in
      Institutional Access: Sign in to ScienceDirect

      References

        • Underhill P.A.
        • Shen P.
        • Lin A.A.
        • Passarino G.
        • Yang W.H.
        • Karuffman E.
        • Bonné-Tamir B.
        • Bertranpetit J.
        • Francalacci P.
        • Ibrahim M.
        • Jenkins T.
        • Kidd J.R.
        • Mehdi S.Q.
        • Seielstad M.T.
        • Wells R.S.
        • Piazza A.
        • Davis R.W.
        • Feldman M.W.
        • Cavalli-Sforza L.L.
        • Oerner P.J.
        Y chromosome sequence variation and the history of human populations.
        Nat. Genet. 2000; 26: 358-361
        • Underhill P.A.
        • Passarino G.
        • Lin A.A.
        • Shen P.
        • Mirazón Lahr M.
        • Foley R.A.
        • Oefner P.J.
        • Cavalli-Sforza L.L.
        The phylogeography of Y chromosome binary haplotypes and the origins of modern human populations.
        Ann. Hum. Genet. 2001; 65: 43-62
        • Hammer M.F.
        • Karafet T.
        • Rasanayagam A.
        • Wood E.T.
        • Altheide T.K.
        • Jenkins T.
        • Griffiths R.C.
        • Templeton A.R.
        • Zegura S.L.
        Out of Africa and back again: nested cladistic analysis of human Y chromosome variation.
        Mol. Biol. Evol. 1998; 15: 427-441
        • Hammer M.F.
        • Karafet T.M.
        • Redd A.J.
        • Jarjanazi H.
        • Santachiara-Benerecetti S.
        • Soodyall H.
        • Zegura S.L.
        Hierarchical patterns of global human Y-chromosome diversity.
        Mol. Biol. Evol. 2001; 18: 1189-1203
        • Karafet T.
        • Xu L.
        • Du R.
        • Wang W.
        • Feng S.
        • Wells R.S.
        • Redd A.J.
        • Zegura S.L.
        • Hammer M.F.
        Paternal population history of East Asia: sources, patterns, and microevolutionary processes.
        Am. J. Hum. Genet. 2001; 69: 615-628
        • Cinnioglu C.
        • King R.
        • Kivisild T.
        • Kalfoglu E.
        • Atasoy S.
        • Cavalleri G.L.
        • Lillie A.S.
        • Roseman C.C.
        • Lin A.A.
        • Prince K.
        • Oefner P.J.
        • Shen P.
        • Semino O.
        • Cavalli-Sforza L.L.
        • Underhill P.A.
        Excavating Y-chromosome haplotype strata in Anatolia.
        Hum. Genet. 2004; 114: 127-148
        • Y Chromosome Consortium (YCC)
        A nomenclature system for the tree of human Y-chromosomal binary haplogroups.
        Genome Res. 2002; 12: 339-348
        • Athey T.W.
        • Nordtvedt K.
        Resolving the placement of haplogroup I-M223 in the Y chromosome phylogenetic tree.
        J. Genet. Genealogy. 2005; 1: 54-55
        • Nei M.
        Analysis of gene diversity in subdivided populations.
        Proc. Natl. Acad. Sci. U.S.A. 1973; 70: 3321-3323
        • Rosser Z.H.
        • Zerjal T.
        • Hurles M.E.
        • Adojaan M.
        • Alavantic D.
        • Amorim A.
        • Amos W.
        • Armenteros M.
        • Arroyo E.
        • Barbujani G.
        • Beckman G.
        • Beckman L.
        • Bertranpetit J.
        • Bosch E.
        • Bradley D.G.
        • Brede G.
        • Cooper G.
        • Côrte-Real H.B.S.M.
        • de Knijff P.
        • Decorte R.
        • Dubrova Y.E.
        • Evgrafov O.
        • Gilissen A.
        • Glisic S.
        • Gölge M.
        • Hill E.W.
        • Jeziorowska A.
        • Kalaydjieva L.
        • Kayser M.
        • Kivisild T.
        • Kravchenko S.A.
        • Krumina A.
        • Kučinskas V.
        • Lavinha J.
        • Livshits L.A.
        • Malaspina P.
        • Maria S.
        • McElreavey K.
        • Meitinger T.A.
        • Mikelsaar A.V.
        • Mitchell R.J.
        • Nafa K.
        • Nicholson J.
        • Nørby S.
        • Pandya A.
        • Parik J.
        • Patsalis P.C.
        • Pereira L.
        • Peterlin B.
        • Pielberg G.
        • Prata M.J.
        • Previderé C.
        • Roewer L.
        • Rootsi S.
        • Rubinsztein D.C.
        • Saillard J.
        • Santos F.R.
        • Stefanescu G.
        • Sykes B.C.
        • Tolun A.
        • Villems R.
        • Tyler-Smith C.
        • Jobling M.A.
        Y-chromosomal diversity in Europe is clinical and influenced primarily by geography, rather than by language.
        Am. J. Hum. Genet. 2000; 67: 1526-1543
        • Semino O.
        • Passarino G.
        • Oefner P.J.
        • Lin A.A.
        • Arbuzova S.
        • Beckman L.E.
        • De Benedictis G.
        • Francalacci P.
        • Kouvatsi A.
        • Limborska S.
        • Marcikiae M.
        • Mika A.
        • Mika B.
        • Primorac D.
        • Santachiara-Benerecetti A.S.
        • Cavalli-Sforza L.L.
        • Underhill P.A.
        The genetic legacy of Paleolithic Homo sapiens in extant Europeans: a Y chromosome perspective.
        Science. 2000; 290: 1155-1159
        • Brandstätter A.
        • Egyed B.
        • Zimmermann B.
        • Duftner N.
        • Padar Z.
        • Parson W.
        Migration rates and genetic structure of two Hungarian ethnic groups in Transylvania, Romania.
        Ann. Hum. Genet. 2007; 71: 791-803
        • Kiss K.É.
        The Syntax of Hungarian.
        Cambridge University Press, Cambridge2002 (pp. 1–2)
        • Lincoln P.
        • Carracedo A.
        Publication of population data of human polymorphisms.
        Forensic Sci. Int. 2000; 110: 3-5