Advertisement
Announcement of population data| Volume 3, ISSUE 3, e81-e82, June 2009

Population data on 15 autosomal STRs in a sample from Colombia

Published:September 15, 2008DOI:https://doi.org/10.1016/j.fsigen.2008.08.002

      Abstract

      We present population genetic data of 15 STRs (CSF1PO, D3S1358, D5S818, D7S820, D8S1179, D13S317, D16S539, D18S51, D21S11, FGA, PENTA D, PENTA E, TH01, TPOX and VWA) obtained from a sample of 617 unrelated individuals from Colombia. Deviations from Hardy–Weinberg equilibrium were assessed and allele frequencies and parameters of forensic interest for each STR were calculated. The combined power of exclusion (PE) and the combined power of discrimination (PD) for the 15 tested STR loci were 0, 99999895 and more than 0, 9999999, respectively. The combined MP value was 1 in 1, 07888 × 10−17. Population comparisons between our sample and neighbouring populations from Latin America were carried out. Significant differences in above six markers were observed between our sample and two populations from Rio de Janeiro.

      Keywords

      To read this article in full you will need to make a payment

      Purchase one-time access:

      Academic & Personal: 24 hour online accessCorporate R&D Professionals: 24 hour online access
      One-time access price info
      • For academic or personal research use, select 'Academic and Personal'
      • For corporate R&D use, select 'Corporate R&D Professionals'

      Subscribe:

      Subscribe to Forensic Science International: Genetics
      Already a print subscriber? Claim online access
      Already an online subscriber? Sign in
      Institutional Access: Sign in to ScienceDirect

      References

        • Excoffier L.
        • Laval G.
        • Schneider S.
        Arlequin ver. 3.0: an integrated software package for population genetics data analysis.
        Evol. Bioinform. (Online). 2005; 1: 47-50
        • Gaviria A.
        • Ibarra A.
        • Jaramillo N.
        • Palacio O.D.
        • Acosta M.A.
        • Brión M.
        • Carracedo A.
        Nineteen autosomal microsatellite data from Antioquia (Colombia).
        Forensic Sci. Int. 2004; 143: 69-71
        • Bravo M.L.J.
        • Builes J.J.
        • de Pancorbo M.M.
        • Moreno M.M.
        Analysis of 12 STR loci in Antioquia (Colombia) population sample.
        Int. Congress Ser. 2004; 1261: 151-153
        • Benítez-Paéz A.
        • Ossa R.H.
        Allelic frequencies at 12 STR loci in Colombina population.
        Forensic Sci. Int. 2003; 136: 86-88
        • Bravo M.L.
        • Moreno M.A.
        • Builes J.J.
        • Salas A.
        • Lareu M.V.
        • Carracedo A.
        Autosomal STR genetic variation in negroid Chocó and Bogotá populations.
        Int. J. Legal Med. 2001; 115: 102-104
        • Rey M.
        • Gutiérrez A.
        • Schroeder B.
        • Usaquén W.
        • Carracedo A.
        • Bustos I.
        • Giraldo A.
        Allele frequencies for 13 STRs from two Colombian populations: Bogotá and Boyacá.
        Forensic Sci. Int. 2003; 136: 83-85
        • Paredes M.
        • Galindo A.
        • Bernal M.
        • Avila S.
        • Andrade D.
        • Vergara C.
        • Rincón M.
        • Romero R.E.
        • Navarrete M.
        • Cárdenas M.
        • Ortega Y.
        • Suárez D.
        • Cifuentes A.
        • Salas A.
        • Carracedo A.
        Analysis of the CODIS autosomal STR loci in four main Colombian regions.
        Forensic Sci. Int. 2003; 137: 67-73
        • Vargas C.I.
        • Castillo A.
        • Gil A.M.
        • Pico A.L.
        • García O.
        pulation genetic data for 13 STR loci in a northeast Colombian (department of Santander) population.
        Int. Congress Ser. 2003; 1239: 197-200
        • Yunis J.J.
        • García O.
        • Moreno S.
        • Pineda C.
        • Rodríguez C.
        • Uriarte I.
        • Yunis E.
        Population data on Powerplex 2.1 (FGA, vWA, TPOX, THO1, Penta E, D18S51, D21S11, D3S1358,D8S1179) and Gammastar (D16S539, D7S820, D13S317, D5S818) in a sample of Caucasian-Mestizos from Colombia.
        Int. Congress Ser. 2003; 1239: 207-212
        • Gómez M.V.
        • Reyes M.E.
        • Cárdenas H.
        • García O.
        Genetic variation for 7 STR loci in a Colombian population (Department of Valle del Cauca).
        J. Forensic Sci. 2003; 48: 687-688
        • da Silva D.
        • Góez A.
        • Carvalho E.
        Eight short tandem repeats (STR) frequencies for descendants from Terena Indigenous Brazilian Group.
        J. Forensic Sci. 2004; 49: 398-399
        • Figueiredo M.
        • Fernández-Rosado F.
        • Kunii I.
        • Pacheco A.C.
        • Lorente J.
        • Budowle B.
        Brazilian Caucasian Population Data for 15 STR Loci (Powerplex 16 TM Kit).
        J. Forensic Sci. 2004; 49: 167-169
        • da Silva F.
        • Dellalibera E.
        • Nigam P.
        • da Silva L.
        • dos Santos R.
        Microsatellite markers in the Population from Rio Grande Do Norte, Northeastern Brazil.
        J. Forensic Sci. 2003; 48: 1189-1190
        • Caine L.
        • Corte-Real F.
        • Anjos M.
        • Carvalho M.
        • Serra A.
        • Antunes H.
        • Vide M.
        • Viera D.
        Allele frequencies of 13 Loci in the Santa Catarina Population of Southern Brazil.
        J. Forensic Sci. 2003; 48: 901-902
        • Góes A.C.
        • da Silva D.A.
        • Fonseca Gil E.H.
        • da Silva M.T.
        • Pereira R.W.
        • de Carvalho E.F.
        Allele frequencies data and statistic parameters for 16 STR loci – D19S433, D2S1338, CSF1PO, D16S539, D7S820, D21S11, D18S51, D13S317, D5S818, FGA, Penta E, TH01, vWA, D8S1179, TPOX, D3S1358 – in the Rio de Janeiro population, Brazil.
        Forensic Sci. Int. 2004; 140: 131-132
        • Borges da Silva E.
        • Dellalibera E.
        • Souza M.
        • dos Santos Silva R.
        • da Silva L.M.
        Population genetics of eight STR loci – CSF1PO, TPOX, THO1, D16S359, D7S820, D13S317, F13B and LPL – in a Brazilian population from the State of Piaui, Northeast Brazil.
        Forensic Sci. Int. 2002; 126: 90-92
        • Ferreira da Silva L.A.
        • Pimentel B.J.
        • Almeida de Azevedo D.
        • Pereira da Silva E.N.
        • Silva dos Santos S.
        Allele frequencies of nine STR-loci – D16S539, D7S820, D13S317, CSF1P0, TPOX, TH01, F13A01, FESFPS, D13S317, CSF1P0, TPOS, THO1, F13A01, FESFPS and vWA – in the population from Alagoas, northeastern Brazil.
        Forensic Sci. Int. 2002; 130: 187-188
        • Bydlowski S.P.
        • de Moura-Neto R.S.
        • Soares R.P.
        • Silva R.
        • Debes-Bravo A.A.
        • Morganti L.
        Genetic data on 12 STRs (F13A01, F13B, FESFPS, LPL, CSF1P0, TPOX, THO1, vWA, D16S539, D7S820, D13S317, D5S818) from four ethnic groups of Sao Paulo, Brazil.
        Forensic Sci. Int. 2003; 135: 67-71
        • González-Andrade F.
        • Sánchez Q.D.
        • Martínez-Jarreta B.
        Genetic profile of the Ecuadorian Mestizo population (Ecuador-South America) by using the Powerplex 16 System Kit.
        Forensic Sci. Int. 2003; 135: 64-66
        • Sánchez Q.D.
        • González-Andrade F.
        • Martínez-Jarreta B.
        Population genetics of 12 STR loci in a sample of Mestizos from Ecuador (South America).
        J. Forensic Sci. 2003; 48: 453-454
        • Yunis J.J.
        • Baena A.
        • García O.
        • Uriarte I.
        • Yunis E.J.
        Population data of F13A01, FES/FPS, VWA, CSF1P0, TPOX and THO1 short tandem repeat loci in a sample of African descent individuals of Colombia.
        Forensic Sci. Int. 2001; 117: 235-236
        • Durán R.
        • Zarante I.
        • Acevedo M.L.
        • Villegas M.R.
        • Salazar J.
        • Bocanegra B.
        • Bernal J.
        Allelic frequency of six STR loci in five Colombian cities.
        J. Forensic Sci. 2003; 48: 887-888
        • Acosta M.A.
        • Brión M.
        • Lareu M.V.
        • Carracedo A.
        Genetic data on eight STRs (D5S818, D7S820, F13B, LPL, TH01, TP0X, VWA31, CSF1PO) from a Colombian population.
        Forensic Sci. Int. 2002; 129: 216-218
        • Tito R.
        • López P.W.
        • Iannacone G.
        • Lizárraga B.
        Genetic diversity of sixteen STRs in the Peruvian Mesa Redonda Lima population.
        J. Forensic Sci. 2004; 49: 852-853
        • Silva D.A.
        • Crouse C.A.
        • Chakraborty R.
        • Góez A.C.S.
        • Carvalho E.F.
        Statistical analyses of 14 short tandem repeat loci in Brazilian populations from Rio de Janeiro and Mato Grosso do Sul states for forensic and identity testing purposes.
        Forensic Sci. Int. 2004; 139: 173-176
        • Gómez M.V.
        • Reyes M.E.
        • Cárdenas H.
        • García O.
        Genetic variation for 12 STRs loci in a Colombian population (Department of Valle del Cauca).
        Forensic Sci. Int. 2003; 137: 235-237
        • Fernández-Rosado F.
        • Martínez-Espín E.
        • Rodríguez T.
        • Entrala C.
        • Álvarez J.C.
        • Lorente J.A.
        • Lorente M.
        • Budowle B.
        • Villanueva E.
        Population data of Ecuador fifteen STR loci (Powerplex 16).
        Journal For. Sci. 2002; 48: 224-227
        • Yunis J.J.
        • García O.
        • Moreno S.
        • Uriarte I.
        • Yunis E.J.
        Population on D7S820, FGA, D1S533 and D9S304 in a sample of Caucasian-Mestizos from Colombia.
        Int. Congress Ser. 2003; 1239: 201-205
        • Palacio O.D.
        • Triana O.
        • Gavira A.
        • Ibarra A.A.
        • Ochoa L.M.
        • Posada Y.
        • Maya M.C.
        • Lareu M.V.
        • Brión M.
        • Acosta M.A.
        • Carracedo A.
        Autosomal microsatellite data from Nothwestern Colombia.
        Forensic Sci. Int. 2006; 160: 217-220
        • Martínez B.
        • Caraballo L.
        • Barón F.
        • Gusmão L.
        • Amorim A.
        • Carracedo A.
        Analysis of STR loci in a Cartagena, a Caribbean city of Colombia.
        Forensic Sci. Int. 2006; 160: 221-223
        • Martínez B.
        • Caraballo L.
        • Gusmão L.
        • Amorim A.
        • Carracedo A.
        Autosomic STR population data in two Caribbean samples from Colombia.
        Forensic Sci. Int. 2005; 152: 79-81
        • Lincoln P.
        • Carracedo A.
        Publication of population data of human polymorphisms.
        Forensic Sci. Int. 2000; 110: 3-5