Abstract
In the present work, we have evaluated eight reportedly blood-specific mRNA markers
(HBB, HBA, ALAS2, CD3G, ANK1, PBGD, SPTB, AQP9) in an attempt to determine the most
suitable ones for use in forensic applications based on their sensitivities, specificities
and performance with casework samples. While varying levels of expression were observed,
all markers were relatively sensitive requiring as little as 1 ng of RNA input into the reverse transcription (RT) reaction. In singleplex reactions,
seven of the eight analyzed blood markers (all except AQP9) demonstrated a high degree
of specificity for blood. In multiplex reactions, non-reproducible cross-reactivity
was observed for several of the mRNA markers, which was reduced and, in most cases,
eliminated when less input total RNA was used. Additionally, some cross-reactivity
was observed with tissue and animal samples. Despite differences in the observed sensitivity
and specificity of the blood markers examined in this study, a number of the candidates
appear to be suitable for inclusion in appropriately validated multiplex mRNA-based
body fluid identification systems.
Keywords
To read this article in full you will need to make a payment
Purchase one-time access:
Academic & Personal: 24 hour online accessCorporate R&D Professionals: 24 hour online accessOne-time access price info
- For academic or personal research use, select 'Academic and Personal'
- For corporate R&D use, select 'Corporate R&D Professionals'
Subscribe:
Subscribe to Forensic Science International: GeneticsAlready a print subscriber? Claim online access
Already an online subscriber? Sign in
Register: Create an account
Institutional Access: Sign in to ScienceDirect
References
- Detection of epithelial cells in dried blood stains by reverse transcriptase-polymerase chain reaction.J. Forensic Sci. 1999; 44: 1232-1236
- Evaluation of mRNA markers for the identification of menstrual blood.J. Forensic Sci. 2002; 47: 1278-1282
- Protamine mRNA as molecular marker for spermatozoa in semen stains.Int. J. Legal Med. 2003; 117: 175-179
- Messenger RNA profiling: a prototype method to supplant conventional methods for body fluid identification.Forensic Sci. Int. 2003; 135: 85-96
- Successful identification of two years old menstrual bloodstain by using MMP-11 shorter amplicons.J. Forensic Sci. 2004; 49: 1387
- Multiplex mRNA profiling for the identification of body fluids.Forensic Sci. Int. 2005; 152: 1-12
- Messenger RNA profiling: a novel method for body fluid identification by real-time PCR.Forensic Sci. Int. 2006; 157: 181-186
- Real-time PCR assays for the detection of tissue and body fluid specific mRNAs.Int. Congr. Ser. 2006; 1288: 685-687
- The use of real-time PCR for forensic stain identification.Promega Profiles DNA. 2007; 10: 3-5
- mRNA profiling for body fluid identification by multiplex quantitative RT-PCR.J. Forensic Sci. 2007; 52: 1252-1262
- RNA in forensic science.Forensic Sci. Int. Genet. 2007; 1: 69-74
- Identification of menstrual blood by real time RT-PCR: technical improvements and the practical value of negative results.Forensic Sci. Int. 2008; 174: 54-58
- Stable RNA markers for identification of blood and saliva stains from whole genome expression analysis of time-wise degraded samples.Int. J. Legal Med. 2008; 122: 135-142
- mRNA profiling for body fluid identification by reverse transcription endpoint PCR and realtime PCR.Forensic Sci. Int. Genet. 2009; 3: 80-88
- mRNA profiling for the identification of sperm and seminal plasma.Forensic Sci. Int. Genet. Suppl. Ser. 2009; 2: 534-535
- mRNA profiling for the identification of blood—results of a collaborative EDNAP exercise.Forensic Sci. Int. Genet. 2010; https://doi.org/10.1016/j.fsigen.2010.01.003
- The development of a mRNA multiplex RT-PCR assay for the definitive identification of body fluids.Forensic Sci. Int. Genet. 2010; 4: 244-256
- Quantification of RNA degradation by semi-quantitative duplex and competitive RT-PCR: a possible indicator of the age of bloodstains?.Forensic Sci. Int. 2003; 138: 94-103
- Recovery and stability of RNA in vaginal swabs and blood, semen and saliva stains.J. Forensic Sci. 2008; 53: 296-305
- New markers for old stains: stable mRNA markers for blood and saliva identification from up to 16-year-old stains.Int. J. Legal Med. 2009; 123: 71-74
- Regulation of human alpha-globin gene expression and alpha-thalassemia.Genet. Mol. Res. 2008; 7: 1045-1053
- The human β-globin locus control region.Eur. J. Biochem. 2002; 269: 1589-1599
- Human delta-aminolevulinate synthase: assignment of the housekeeping gene to 3p21 and the erythroid-specific gene to the X chromosome.Genomics. 1990; 7: 207-214
- DNase hypersensitivity and methylation of the human CD3G and D genes during T-cell development.Immunogenetics. 1990; 31: 13-20
- Structure and organization of the human Ankyrin-1 gene.J. Biol. Chem. 1997; 272: 199220-219228
- Human erythroid porphobilinogen deaminase exists in 2 splice variants.Blood. 2001; 97: 815-817
- Erythroid-specific processing of human β spectrin I pre-mRNA.Blood. 1994; 84: 1992-1999
- Cloning and functional expression of a new aquaporin (AQP9) abundantly expressed in the peripheral leukocytes permeable to water and urea, but not to glycerol.Biochem. Biophys. Res. Commun. 1998; 244: 268-274
- An investigation of the rigor of interpretation rules for STRs derived from less than 100 pg of DNA.Forensic Sci. Int. 2000; 112: 17-40
- Application of low copy number DNA profiling.Croat. Med. J. 2001; 42: 229-232
- Whole genome amplification strategy for forensic genetic analysis using single or few cell equivalents of genomic DNA.Anal. Biochem. 2005; 346: 246-257
- DNA amplification on chemically structured chips in forensic STR analysis.Arch. Kriminol. 2008; 222: 117-127
- Simplified low-copy-number DNA analysis by post-PCR purification.J. Forensic Sci. 2007; 52: 820-829
- Characterization of 26 miniSTR loci for improved analysis of degraded DNA samples.J. Forensic Sci. 2008; 53: 73-80
- Identification of forensically relevant body fluids using a panel of differentially expressed microRNAs.Anal. Biochem. 2009; 387: 303-314
- MicroRNA markers for forensic body fluid identification obtained from microarray screening and quantitative RT-PCR confirmation.Int. J. Legal Med. 2010; 124: 217-226
Article info
Publication history
Published online: October 08, 2010
Accepted:
September 9,
2010
Received in revised form:
August 23,
2010
Received:
May 4,
2010
Identification
Copyright
© 2010 Elsevier Ireland Ltd. Published by Elsevier Inc. All rights reserved.