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Research Article| Volume 15, P43-48, March 2015

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The new Y Chromosome Haplotype Reference Database

  • Sascha Willuweit
    Correspondence
    Corresponding author at: Charité – Universitätsmedizin Berlin, Institute of Legal Medicine and Forensic Sciences, Department of Forensic Genetics, Augustenburger Platz 1, 13353 Berlin, Germany. Tel.: +49 30 450525032; fax: +49 30 450525912.
    Affiliations
    Department of Forensic Genetics, Institute of Legal Medicine and Forensic Sciences, Charité – Universitätsmedizin, Berlin, Germany
    Search for articles by this author
  • Lutz Roewer
    Affiliations
    Department of Forensic Genetics, Institute of Legal Medicine and Forensic Sciences, Charité – Universitätsmedizin, Berlin, Germany
    Search for articles by this author
Published:December 03, 2014DOI:https://doi.org/10.1016/j.fsigen.2014.11.024

      Highlights

      • Free online Y Chromosome Haplotype Reference Database for use in forensic casework.
      • Worldwide repository of over 136,000 9-locus, over 84,000 17-locus, over 25,000 23-locus haplotypes and 15,000 Y SNP profiles from 917 sampling locations in 128 countries.
      • Search using Excel sheets or GeneMapper exports instead of typing.
      • Assessment of haplotype frequencies (observed and estimated).
      • Enhanced interpretation tools like LR-based mixture calculation.

      Abstract

      After opening the first version of an internet-accessible worldwide reference database of Y chromosome profiles 14 years ago and six years after the last major relaunch the new YHRD 4.0 repository and website has been rolled-out. By November 2014 about 136k 9-locus haplotypes, among these 84k 17-locus haplotypes, 25k 23-locus haplotypes and 15k Y SNP profiles from 917 sampling locations in 128 countries have been submitted by more than 250 institutes and laboratories. In geographic terms, about 39% of the YHRD samples are from Europe, 32% from Asia, 16% from South America, 6% from North America, 4% from Africa and 2% from Oceania/Australia. Worldwide collaboration is the driving force for the rapid growth of the database and this, in turn, allows the evaluation and implementation of enhanced interpretation tools (variable frequency estimators, LR-based mixture and kinship analysis, Y-SNP-based ancestry assessment).

      Keywords

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