Highlights
- •Free online Y Chromosome Haplotype Reference Database for use in forensic casework.
- •Worldwide repository of over 136,000 9-locus, over 84,000 17-locus, over 25,000 23-locus haplotypes and 15,000 Y SNP profiles from 917 sampling locations in 128 countries.
- •Search using Excel sheets or GeneMapper exports instead of typing.
- •Assessment of haplotype frequencies (observed and estimated).
- •Enhanced interpretation tools like LR-based mixture calculation.
Abstract
After opening the first version of an internet-accessible worldwide reference database
of Y chromosome profiles 14 years ago and six years after the last major relaunch
the new YHRD 4.0 repository and website has been rolled-out. By November 2014 about
136k 9-locus haplotypes, among these 84k 17-locus haplotypes, 25k 23-locus haplotypes
and 15k Y SNP profiles from 917 sampling locations in 128 countries have been submitted
by more than 250 institutes and laboratories. In geographic terms, about 39% of the
YHRD samples are from Europe, 32% from Asia, 16% from South America, 6% from North
America, 4% from Africa and 2% from Oceania/Australia. Worldwide collaboration is
the driving force for the rapid growth of the database and this, in turn, allows the
evaluation and implementation of enhanced interpretation tools (variable frequency
estimators, LR-based mixture and kinship analysis, Y-SNP-based ancestry assessment).
Keywords
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References
- Y Chromosome haplotype reference database (YHRD): update.Forensic Sci. Int. Genet. 2007; 1: 83-87
- A global analysis of Y-chromosomal haplotype diversity for 23 STR loci.Forensic Sci. Int. Genet. 2014; 12: 12-23
- DNA commission of the International Society of Forensic Genetics: recommendations on forensic analysis using Y-chromosome STRs.Int. J. Legal Med. 2001; 114: 305-309
- Fundamental problem of forensic mathematics – the evidential value of a rare haplotype.Forensic Sci. Int. Genet. 2010; 4: 281-291
- Y-STR frequency surveying method: a critical reappraisal.Forensic Sci. Int. Genet. 2011; 5: 84-90
- Estimating trace-suspect match probabilities for singleton Y-STR haplotypes using coalescent theory.Forensic Sci. Int. Genet. 2013; 7: 264-271
- The discrete Laplace exponential family and estimation of Y-STR haplotype frequencies.J. Theor. Biol. 2013; 329: 39-51
- The RSpec Book: Behaviour Driven Development with RSpec, Cucumber, and Friends.1st ed. Pragmatic Bookshelf, Frisco, TX, USA2012
- Test Driven Development for Embedded C.1st ed. Pragmatic Bookshelf, Frisco, TX, USA2011
- Information Technology—Programming Languages—Ruby.2012
- Algorithms on strings.Trees and Sequences: Computer Science and Computational Biology. 1st ed. Cambridge University Press, Cambridge, United Kingdom1997: 70-73
- R: A Language and Environment for Statistical Computing.R Foundation for Statistical Computing, Vienna, Austria2014
- Snow: Simple Network of Workstations. R Package Version 0.3-13.2013
- Some demographic and genetic consequences of environmental heterogeneity for biological control.Bull. Entomol. Soc. Am. 1969; 15: 237-240
- Metapopulation Biology: Ecology, Genetics, and Evolution.Academic Press, San Diego1997
- Signature of recent historical events in the European Y-chromosomal STR haplotype distribution.Hum. Genet. 2005; 116: 279-291
- Geostatistical inference of main Y-STR-haplotype groups in Europe.Forensic Sci. Int. Genet. 2011; 5: 91-94
- Significant genetic differentiation between Poland and Germany follows present-day political borders, as revealed by Y-chromosome analysis.Hum. Genet. 2005; 117: 428-443
- Analysis of Y Chromosome STR haplotypes in the European part of Russia reveals high diversities but non-significant genetic distances between populations.Int. J. Legal Med. 2008; 122: 219-223
- Continent-wide decoupling of Y-chromosomal genetic variation from language and geography in native South Americans.PLoS Genet. 2013; 9: e1003460
- Seeing the wood for the trees: a minimal reference phylogeny for the human Y Chromosome.Hum. Mutat. 2014; 35: 187-191
- The use of confidence or fiducial limits illustrated in the case of the binomial.Biometrika. 1934; 26: 404-413
- The sampling theory of selectively neutral alleles.Theor. Popul. Biol. 1972; 3: 87-112
- Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data.Genetics. 1992; 131: 479-491
- A nonlinear mapping for data structure analysis.IEEE Trans. Comput. 1969; 18: 401-409
- Forensic interpretation of Y-chromosomal DNA mixtures.Forensic Sci. Int. 2005; 152: 209-213
- Paternity testing using Y-STR haplotypes: assigning a probability for paternity in cases of mutations.Int. J. Legal Med. 2001; 115: 12-15
- Forensic DNA evidence interpretation.1st ed. CRC Press, Boca Raton2005: 388-389
- Update of the guidelines for the publication of genetic population data.Forensic Sci. Int. Genet. 2014; 10: A1-A2
- Foreword. Genetic disciplines surrounding haploid DNA markers.Forensic Sci. Int. Genet. 2013; 7: 567
Article info
Publication history
Published online: December 03, 2014
Footnotes
☆Y Chromosome Haplotype Reference Database: https://yhrd.org.
Identification
Copyright
© 2014 Published by Elsevier Inc.