Advertisement
Research Article| Volume 16, P239-245, May 2015

Tri-allelic pattern of short tandem repeats identifies the murderer among identical twins and suggests an embryonic mutational origin

  • Author Footnotes
    1 These authors contributed equally to this work.
    Li-Feng Wang
    Correspondence
    Corresponding author at: Fourth Military Medical University, Department of Biochemistry and Molecular Biology, Xi’an, China. Tel.: +86 029 87971127.
    Footnotes
    1 These authors contributed equally to this work.
    Affiliations
    Department of Biochemistry and Molecular Biology, Xi’an, Shaanxi, China

    Fourth Military Medical University, Xi’an, Shaanxi, China
    Search for articles by this author
  • Author Footnotes
    1 These authors contributed equally to this work.
    Ying Yang
    Footnotes
    1 These authors contributed equally to this work.
    Affiliations
    Department of Biochemistry and Molecular Biology, Xi’an, Shaanxi, China

    Center for DNA Typing, Xi’an, Shaanxi, China

    Fourth Military Medical University, Xi’an, Shaanxi, China
    Search for articles by this author
  • Xiao-Nan Zhang
    Affiliations
    Department of Biochemistry and Molecular Biology, Xi’an, Shaanxi, China

    Center for DNA Typing, Xi’an, Shaanxi, China

    Fourth Military Medical University, Xi’an, Shaanxi, China
    Search for articles by this author
  • Xiao-Liang Quan
    Affiliations
    Public Security Bureau, Qi’shan, Shaanxi, China
    Search for articles by this author
  • Yuan-Ming Wu
    Correspondence
    Corresponding author at: Fourth Military Medical University, Center for DNA Typing, Xi'an, Shaanxi, China. Tel.: +86 029 84774978.
    Affiliations
    Department of Biochemistry and Molecular Biology, Xi’an, Shaanxi, China

    Center for DNA Typing, Xi’an, Shaanxi, China

    Fourth Military Medical University, Xi’an, Shaanxi, China
    Search for articles by this author
  • Author Footnotes
    1 These authors contributed equally to this work.
Published:February 11, 2015DOI:https://doi.org/10.1016/j.fsigen.2015.01.010

      Highlights

      • The real criminal from monozygotic twins was “unluckily” identified through the traditional STR test by the accidental emerge of a tri-allelic pattern.
      • STR as personal genetic marker could mutate pass generations.
      • Loop containing false priming induced STR repeat length variation occurs in cell mitosis, which is after embryonic zygote formation and during the early development of the individual after the division of the blastocyte.
      • The genotypes of parent–child mismatches, aberrant di-allelic patterns, and type 1 or 2 tri-allelic patterns should be considered as independent, but interconnected forms of STR mutation.

      Abstract

      Monozygotic twins can be co-identified by genotyping of short tandem repeats (STRs); however, for distinguishing them, STR genotyping is ineffective, especially in the case of murder. Here, a rarely occurring tri-allelic pattern in the vWA locus (16, 18, 19) was identified only in the DNA of one identical twin, which could help to exonerate the innocent twin in a murder charge. This mutation was defined as primary through genotyping of the family and could be detected in blood, buccal and semen samples from the individual; however, two alternative allele-balanced di-allelic patterns (16, 18 or 16, 19) were detected in hair root sheath cells. Such a kind of segregation indicates a one-step mutation occurs in cell mitosis, which is after embryonic zygote formation and during the early development of the individual after the division of the blastocyte. Sequencing revealed the insertion between the allele 18 and 19 is a repeat unit of TAGA/TCTA (plus/minus strand), which belongs to “AGAT/ATCT”-based core repeats identified from all tri-allelic pattern reports recorded in the STR base and a detailed model was proposed for STR repeat length variation caused by false priming during DNA synthesis. Our model illustrates the possible origination of allele-balanced and unbalanced tri-allelic pattern, clarifies that the genotypes of parent–child mismatches, aberrant di-allelic patterns, and type 1 or 2 tri-allelic patterns should be considered as independent, but interconnected forms of STR mutation.

      Keywords

      To read this article in full you will need to make a payment

      Purchase one-time access:

      Academic & Personal: 24 hour online accessCorporate R&D Professionals: 24 hour online access
      One-time access price info
      • For academic or personal research use, select 'Academic and Personal'
      • For corporate R&D use, select 'Corporate R&D Professionals'

      Subscribe:

      Subscribe to Forensic Science International: Genetics
      Already a print subscriber? Claim online access
      Already an online subscriber? Sign in
      Institutional Access: Sign in to ScienceDirect

      References

        • Hannan A.J.
        Tandem repeat polymorphisms: mediators of genetic plasticity, modulators of biological diversity and dynamic sources of disease susceptibility.
        Adv. Exp. Med. Biol. 2012; 769: 1-9
        • Butler J.M.
        Genetics and genomics of core short tandem repeat loci used in human identity testing.
        J. Forensic Sci. 2006; 51: 253-265
        • Fromm-Dornieden C.
        • et al.
        Multiplex analysis of genetic markers related to body mass index (BMI) and bone mineral density (BMD).
        Anthropol. Anz. 2012; 69: 423-438
        • Choi J.Y.
        • Seo T.S.
        An integrated microdevice for high-performance short tandem repeat genotyping.
        Biotechnol. J. 2009; 4: 1530-15341
        • Bugert P.
        • et al.
        Blood group ABO genotyping in paternity testing.
        Transfus. Med. Hemother. 2012; 39: 182-186
        • Babb P.L.
        • et al.
        An optimized microsatellite genotyping strategy for assessing genetic identity and kinship in Azara’s owl monkeys (Aotus azarai).
        Folia Primatol. (Basel). 2011; 82: 107-117
        • Hannelius U.
        • et al.
        Large-scale zygosity testing using single nucleotide polymorphisms.
        Twin Res. Hum. Genet. 2007; 10: 604-625
        • Vogelstein B.
        • et al.
        Cancer genome landscapes.
        Science. 2013; 339: 1546-1558
        • Ellegren H.
        Microsatellites: simple sequences with complex evolution.
        Nat. Rev. Genet. 2004; 5: 435-445
        • Brinkmann B.
        • et al.
        Mutation rate in human microsatellites: influence of the structure and length of the tandem repeat.
        Am. J. Hum. Genet. 1998; 62: 1408-1415
        • Leopoldino A.M.
        • Pena S.D.
        The mutational spectrum of human autosomal tetranucleotide microsatellites.
        Hum. Mutat. 2003; 21: 71-79
        • Bruder C.E.
        • et al.
        Phenotypically concordant discordant monozygotic twins display different DNA copy-number-variation profiles.
        J. Am. Hum. Genet. 2008; 82: 763-771
        • Kaminsky Z.A.
        • et al.
        DNA methylation profiles in monozygotic and dizygotic twins.
        Nat. Genet. 2009; 41: 240-245
        • Weber-Lehmann J.
        • et al.
        Finding the needle in the haystack: differentiating identical twins in paternity testing and forensics by ultra-deep next generation sequencing.
        Forensic Sci. Int. Genet. 2014; 9: 42-46
        • Jarne P.
        • Lagoda P.J.
        Microsatellites, from molecules to populations and back.
        Trends Ecol. Evol. 1996; 11: 424-429
        • Eckert K.A.
        • Hile S.E.
        Every microsatellite is different: intrinsic DNA features dictate mutagenesis of common microsatellites present in the human genome.
        Mol. Carcinog. 2009; 48: 379-388
        • Jansen A.
        • Gemayel R.
        • Verstrepen K.J.
        Unstable microsatellite repeats facilitate rapid evolution of coding and regulatory sequences.
        Genome Dyn. 2010; 7: 108-125
        • Michael T.P.
        • et al.
        Simple sequence repeats provide a substrate for phenotypic variation in the Neurospora crassa circadian clock.
        PLoS One. 2007; 2: e795
        • Sears K.E.
        • et al.
        The correlated evolution of Runx2 tandem repeats, transcriptional activity, and facial length in carnivora.
        Evol. Dev. 2007; 9: 555-565
        • Wilder J.
        • Hollocher H.
        Mobile elements and the genesis of microsatellites in dipterans.
        Mol. Biol. Evol. 2001; 18: 384-392
        • Clayton T.M.
        • et al.
        A genetic basis for anomalous band patterns encountered during DNA STR profiling.
        J. Forensic Sci. 2004; 49: 1207-1214
        • Vidal C.
        • Cassar M.
        A case of tri-allelic pattern at locus D3S1358 on chromosome 3p21 inherited from paternal grandmother.
        Forensic Sci. Int. Genet. 2008; 2: 372-375
        • Tautz D.
        • Schlotterer C.
        Simple sequences.
        Curr. Opin. Genet. Dev. 1994; 4: 832-837