Highlights
- •Y-STR markers contain redundant information due to allelic association.
- •Equivocation-based sequential marker selection reduces this redundancy.
- •Our approach performs superior compared to single-locus strategies.
- •Among other criteria, our approach should guide future selection of marker sets.
Abstract
Keywords
Purchase one-time access:
Academic & Personal: 24 hour online accessCorporate R&D Professionals: 24 hour online accessOne-time access price info
- For academic or personal research use, select 'Academic and Personal'
- For corporate R&D use, select 'Corporate R&D Professionals'
Subscribe:
Subscribe to Forensic Science International: GeneticsReferences
- Evaluation of Y-chromosomal STRs: a multicenter study.Int. J. Legal Med. 1997; 110 (125–133): 41-49
- Mutability of Y-chromosomal microsatellites: rates, characteristics, molecular bases, and forensic implications.Am. J. Hum. Genet. 2010; 87: 341-353
- Toward male individualization with rapidly mutating y-chromosomal short tandem repeats.Hum. Mutat. 2014; 35: 1021-1032
J.M. Thompson, M.M., Ewing, D.R., Rabbach, P.M., Fulmer, C.J., Sprecher, D.R. Storts, The PowerPlex® Y23 System: A New Y-STR Multiplex for Casework and Database Applications. http://www.promega.de/resources/profiles-in-dna/2012/the-powerplex-y23-system-a-new-y-str-multiplex-for-casework-and-database-applications/, 2012.
- A global analysis of Y-chromosomal haplotype diversity for 23 STR loci.Forensic Sci. Int. Genet. 2014; 12C: 12-23
- Evaluation of haplotype discrimination capacity of 35 Y-chromosomal short tandem repeat loci.Forensic Sci. Int. 2008; 174: 182-188
- Variation of 52 new Y-STR loci in the Y chromosome consortium worldwide panel of 76 diverse individuals.Int. J. Legal Med. 2007; 121: 124-127
- Improving global and regional resolution of male lineage differentiation by simple single-copy Y-chromosomal short tandem repeat polymorphisms.Forensic Sci. Int. Genet. 2009; 3: 205-213
- The Y-chromosomal STRs DYS481, DYS570, DYS576 and DYS643.Legal Med. (Tokyo). 2009; 11: S109-S110
- Characterization of the highly discriminatory loci DYS449, DYS481, DYS518, DYS612, DYS626, DYS644 and DYS710.Forensic Sci. Int. Genet. 2010; 4: 104-110
- A scan for linkage disequilibrium across the human genome.Genetics. 1999; 152: 1711-1722
- Linkage disequilibrium between microsatellite markers in the Swedish Sami relative to a worldwide selection of populations.Hum. Genet. 2005; 116: 105-113
- Linkage disequilibrium between microsatellite markers extends beyond 1 cM on chromosome 20 in Finns.Genome Res. 2001; 11: 1221-1226
- Extent of linkage disequilibrium in a Sardinian sub-isolate: sampling and methodological considerations.Hum. Mol. Genet. 2004; 13: 25-33
- Development and characterization of two mini-X chromosomal short tandem repeat multiplexes.Forensic Sci. Int. Genet. 2011; 5: 415-421
- Population genetic analysis of 12 X-STRs in a Somali population sample.Forensic Sci. Int. Genet. 2014; 11: e7-8
- Analysis of linkage and linkage disequilibrium for eight X-STR markers.Forensic Sci. Int. Genet. 2008; 3: 37-41
- No shortcut solution to the problem of Y-STR match probability calculation.Forensic Sci. Int. Genet. 2015; 15: 69-75
- A mathematical theory of communication.Bell Syst. Tech. J. 1948; 27: 623-656
- The effect of single-nucleotide polymorphism marker selection on patterns of haplotype blocks and haplotype frequency estimates.Am. J. Hum. Genet. 2005; 77: 988-998
- Entropy as a measure for linkage disequilibrium over multilocus haplotype blocks.Hum. Hered. 2002; 54: 186-198
- Mathematical Statistics.Wiley, New York1962
- DNA polymorphism detectable by restriction endonucleases.Genetics. 1981; 97: 145-163
- Molecular Evolutionary Genetics.Columbia University Press, New York1987
Promega Corporation, Technical Manual: PowerPlex® Y23 System – I Nstructions For Use Of Products DC2305 AND DC2320. http://www.promega.com, 2012.
R Core Team, R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0, http://www.R-project.org/, 2013.
S. Chasalow, Combinat: combinatorics utilities. R package version 0. 0-8. http://CRAN.R-project.org/package=combinat, 2012.
- A comprehensive survey of human Y-chromosomal microsatellites.Am. J. Hum. Genet. 2004; 74: 1183-1197
- A novel multiplex assay amplifying 13 Y-STRs characterized by rapid and moderate mutation rate.Forensic Sci. Int. Genet. 2015; 15: 49-55
- Design and validation of a highly discriminatory 10-locus Y-chromosome STR multiplex system.Forensic Sci. Int. Genet. 2011; 5: 122-125