Advertisement
Correspondence| Volume 24, e12-e13, September 2016

Native American population data based on the Globalfiler® autosomal STR loci

  • Jillian Ng
    Affiliations
    Molecular Anthropology Laboratory, Department of Anthropology, University of California, One Shields Avenue, Davis, CA 95616, USA
    Search for articles by this author
  • Robert F. Oldt
    Affiliations
    Molecular Anthropology Laboratory, Department of Anthropology, University of California, One Shields Avenue, Davis, CA 95616, USA
    Search for articles by this author
  • Kelly L. McCulloh
    Affiliations
    Forensic Science Graduate Program, University of California, One Shields Avenue, Davis, CA 95616, USA
    Search for articles by this author
  • Jessica A. Weise
    Affiliations
    Forensic Science Graduate Program, University of California, One Shields Avenue, Davis, CA 95616, USA
    Search for articles by this author
  • Joy Viray
    Affiliations
    Sacramento County District Attorney’s Crime Laboratory, 4800 Broadway Suite 200, Sacramento, CA 95820, USA
    Search for articles by this author
  • Bruce Budowle
    Affiliations
    University of North Texas Health Science Center, 3500 Camp Bowie Boulevard, Fort Worth, TX 76107, USA

    Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah, Saudi Arabia, Saudi Arabia
    Search for articles by this author
  • David Glenn Smith
    Affiliations
    Molecular Anthropology Laboratory, Department of Anthropology, University of California, One Shields Avenue, Davis, CA 95616, USA

    Forensic Science Graduate Program, University of California, One Shields Avenue, Davis, CA 95616, USA
    Search for articles by this author
  • Sreetharan Kanthaswamy
    Correspondence
    Corresponding author. Current address: School of Mathematical and and Natural Sciences ASU at the West Campus 4701 W Thunderbird Rd., Glendale, AZ 85306-4908, USA.
    Affiliations
    Molecular Anthropology Laboratory, Department of Anthropology, University of California, One Shields Avenue, Davis, CA 95616, USA

    Forensic Science Graduate Program, University of California, One Shields Avenue, Davis, CA 95616, USA

    California National Primate Research Center, University of California, One Shields Avenue, Davis, CA 95616, USA
    Search for articles by this author

      Highlights

      • The study includes the analysis of 31 Native American tribes.
      • 21 autosomal Globalfiler® STRs were used in the study.
      • Allele frequency and heterozygosity estimates were generated.
      • Probabilities of identity and paternity exclusion were reported.

      Abstract

      Native American population data are limited and thus impact computing accurate statistical parameters for forensic investigations. Thus, additional information should be generated from geographically representative tribes in North America, particularly from those that are not included in existing population databases for forensic use. The Globafiler® PCR Amplification kit was used to produce STR genotypic data for 533 individuals who represent 31 Native American tribal populations derived from eight geographically diverse regions in North America. Population genetic estimates from 21 autosomal STRs are reported.
      To read this article in full you will need to make a payment

      Purchase one-time access:

      Academic & Personal: 24 hour online accessCorporate R&D Professionals: 24 hour online access
      One-time access price info
      • For academic or personal research use, select 'Academic and Personal'
      • For corporate R&D use, select 'Corporate R&D Professionals'

      Subscribe:

      Subscribe to Forensic Science International: Genetics
      Already a print subscriber? Claim online access
      Already an online subscriber? Sign in
      Institutional Access: Sign in to ScienceDirect

      References

        • Kanthaswamy S.
        • Smith D.G.
        Genetic and ethnohistoric evidence suggest current Native American population datasets in the FBI's CODIS database are not sufficiently representative.
        Forensic Sci Int Genet. 2014; 13: e13-5
        • Glaubitz J.C.
        convert: a user-friendly program to reformat diploid genotypic data for commonly used population genetic software packages.
        Mol. Ecol. Notes. 2004; 4: 309-310
        • Shriver M.D.
        • Jin L.
        • Boerwinkle E.
        • Deka R.
        • Ferrell R.E.
        • Chakraborty R.
        A novel measure of genetic distance for highly polymorphic tandem repeat loci.
        Mol. Biol. Evol. 1995; 12: 914-920
        • Excoffier L.
        • Laval G.
        • Schneider S.
        Arlequin (version 3.0): an integrated software package for population genetics data analysis.
        Evol. Bioinform. Online. 2005; 1: 47-50
        • Rice W.R.
        Analyzing tables of statistical tests.
        Evolution. 1989; 43: 223-225
        • National Research Council
        The Evaluation of Forensic DNA Evidence.
        The National Academies Press, Washington, DC1996
        • Budowle B.
        • Chidambaram A.
        • Strickland L.
        • Beheim C.W.
        • Taft G.M.
        • Chakraborty R.
        Population studies on three Native Alaska population groups using STR loci.
        Forensic Sci. Int. 2002; 129: 51-57
        • Budowle B.
        • Shea B.
        • Niezgoda S.
        • Chakraborty R.
        CODIS STR loci data from 41 sample populations.
        J. Forensic Sci. 2001; 46: 453-489
        • McCulloh K.L.
        • Ng J.
        • Oldt R.F.
        • Weise J.A.
        • Viray J.
        • Budowle B.
        • et al.
        The Genetic Structure of Native Americans in North America based on the Globalfiler® STRs.
        J. Forensic Sci. 2016; (submitted)
        • Buckleton J.
        • Curran J.
        • Goudet J.
        • Taylor D.
        • Thiery A.
        • Weir B.S.
        Population-specific FST values for forensic STR markers: a worldwide survey.
        Forensic Sci. Int. Genet. 2016; 23: 91-100
        • Carracedo A.
        • Butler J.M.
        • Gusmao L.
        • Parson W.
        • Roewer L.
        • Schneider P.M.
        Publication of population data for forensic purposes.
        Forensic Sci. Int. Genet. 2010; 4: 145-147