Highlights
- •A novel method for the identification of saliva in forensic samples was developed.
- •The technique is based on the detection of oral bacteria by direct PCR and an ICS.
- •Using this method, the entire analysis process was performed simply and rapidly.
- •Oral bacteria were detected in most saliva swabs, but not in other body fluids.
- •Oral bacteria were detected in a sufficient number of mock forensic samples.
Abstract
In this paper, we describe the development of a novel method to detect oral bacteria
by combining direct polymerase chain reaction (direct PCR) with an immunochromatographic
strip (ICS), enabling the identification of saliva in forensic samples. Direct PCR
was first used to directly amplify specific oral bacterial sequences (from Streptococcus sanguinis and Streptococcus salivarius) from swab samples, circumventing the need for tedious sample preparation steps such
as cell lysis and DNA extraction and purification. The resultant amplicons were then
colorimetrically detected on an ICS, a much more convenient, cost-effective, and user-friendly
detection method than those currently available, thereby allowing the presence or
absence of the target oral bacteria to be determined with the naked eye. Moreover,
the entire analysis process was performed rapidly and with ease using this combination
of direct PCR amplification from swab samples and ICS-based amplicon detection. This
method successfully detected S. sanguinis and S. salivarius in most of the saliva swab samples tested, and returned negative results using blood,
semen, urine, and vaginal fluid swab samples. Furthermore, S. sanguinis and S. salivarius were detected in a large number of mock forensic samples using this technique, which
suggests that direct PCR and ICS-based detection of oral bacteria is sufficient to
demonstrate the presence of saliva. Thus, we believe that the proposed method could
be very useful for the identification of saliva in forensic applications.
Keywords
To read this article in full you will need to make a payment
Purchase one-time access:
Academic & Personal: 24 hour online accessCorporate R&D Professionals: 24 hour online accessOne-time access price info
- For academic or personal research use, select 'Academic and Personal'
- For corporate R&D use, select 'Corporate R&D Professionals'
Subscribe:
Subscribe to Forensic Science International: GeneticsAlready a print subscriber? Claim online access
Already an online subscriber? Sign in
Register: Create an account
Institutional Access: Sign in to ScienceDirect
References
- Analysis of body fluids for forensic purposes: from laboratory testing to non-destructive rapid confirmatory identification at a crime scene.Forensic Sci. Int. 2009; 188: 1-17
- Potential forensic application of DNA methylation profiling to body fluid identification.Int. J. Legal Med. 2012; 126: 55-62
- Molecular approaches for forensic cell type identification: on mRNA, miRNA, DNA methylation and microbial markers.Forensic Sci. Int. Genet. 2015; 18: 21-32
- An improved test for the detection of salivary amylase in stains.J. Forensic Sci. Soc. 1974; 14: 341-344
- The preliminary evaluation of a commercial text kit in the identification of saliva.J. Forensic Sci. Soc. 1983; 23: 135-137
- Amylase levels in semen and saliva stains.J. Forensic Sci. 1986; 31: 426-431
- Identification of saliva stains by determination of the specific activity of amylase.Forensic Sci. Int. 1991; 50: 37-42
- An elisa method for the identification of salivary amylase.J. Forensic Sci. 2005; 50: 1-4
- Developmental validation of RSID TM – saliva: a lateral flow immunochromatographic strip test for the forensic detection of saliva.J. Forensic Sci. 2009; 54: 866-873
- Applicability of two commercially available kits for forensic identification of saliva stains.J. Forensic Sci. 2008; 53: 1117-1122
- Multiplex mRNA profiling for the identification of body fluids.Forensic Sci. Int. 2005; 152: 1-12
- Evaluation of mRNA marker specificity for the identification of five human body fluids by capillary electrophoresis.Forensic Sci. Int. Genet. 2012; 6: 452-460
- mRNA profiling for body fluid identification by multiplex quantitative RT-PCR.J. Forensic Sci. 2007; 52: 1252-1262
- mRNA profiling for body fluid identification by reverse transcription endpoint PCR and realtime PCR.Forensic Sci. Int. Genet. 2009; 3: 80-88
- The development of a mRNA multiplex RT-PCR assay for the definitive identification of body fluids.Forensic Sci. Int. Genet. 2010; 4: 244-256
- PCR detection and identification of oral streptococci in saliva samples using gtf genes.Diagn. Microbiol. Infect. Dis. 2004; 48: 195-199
- A novel method for the identification of saliva by detecting oral streptococci using PCR.Forensic Sci. Int. 2009; 183: 20-23
- A simple identification method of saliva by detecting Streptococcus salivarius using loop-mediated isothermal amplification.J. Forensic Sci. 2011; 56: 158-162
- Molecular identification of vaginal fluid by microbial signature.Forensic Sci. Int. Genet. 2012; 6: 559-564
- Direct STR amplification from whole blood and blood- or saliva-spotted FTA® without DNA purification.J. Forensic Sci. 2008; 53: 335-341
- High-throughput STR analysis for DNA database using direct PCR.J. Forensic Sci. 2013; 58: 989-992
- A novel buffer system AnyDirect, can improve polymerase chain reaction from whole blood without DNA isolation.Clin. Chim. Acta. 2007; 380: 112-117
- Direct polymerase chain reaction from whole blood without DNA isolation.Ann. Clin. Biochem. 2000; 37: 674-680
- An integrated direct loop-mediated isothermal ampli fi cation microdevice incorporated with an immunochromatographic strip for bacteria detection in human whole blood and milk without a sample preparation step.Biosens. Bioelectron. 2016; 79: 273-279
- An integrated slidable direct polymerase chain reaction-capillary electrophoresis microdevice for rapid Y chromosome short tandem repeat analysis.Korean J. Chem. Eng. 2016; 33: 2644-2649
- Direct PCR from whole blood, without DNA extraction.Nucleic Acids Res. 1990; 18: 5908
- Combination of multiplex reverse-transcription loop-mediated isothermal amplification with an immunochromatographic strip for subtyping influenza A virus.Anal. Chim. Acta. 2015; 853: 541-547
- An integrated slidable and valveless microdevice with solid phase extraction, polymerase chain reaction, and immunochromatographic strip parts for multiplex colorimetric pathogen detection.Lab Chip. 2015; 15: 4148-4155
- A packaged paper fluidic-based microdevice for detecting gene expression of influenza A virus.Biosens. Bioelectron. 2014; 61: 485-490
- Periodontitis is associated with a loss of colonization by Streptococcus sanguinis.J. Med. Microbiol. 2008; 57: 495-499
- Defining the normal bacterial flora of the oral cavity.J. Clin. Microbiol. 2005; 43: 5721-5732
- Inhibitory effect of garlic extract on oral bacteria.Arch. Oral Biol. 2005; 50: 645-651
- Drinking habits are associated with changes in the dental plaque microbial community.J. Clin. Microbiol. 2010; 48: 347-356
- Influence of tobacco use in dental caries development.Cent. Eur. J. Public Health. 2007; 15: 116-121
- Streptococcus mutans and Streptococcus sanguinis colonization correlated with caries experience in children.Caries Res. 2008; 42: 444-448
- Effect of a chronic nail-biting habit on the oral carriage of Enterobacteriaceae.Mol. Oral Microbiol. 2007; 22: 1-4
- Performance of MiniPCR TM mini8, a portable thermal cycler.Anal. Sci. Technol. 2016; 29: 79-84
Article info
Publication history
Published online: December 20, 2017
Accepted:
December 19,
2017
Received in revised form:
November 14,
2017
Received:
August 28,
2017
Identification
Copyright
© 2017 Elsevier B.V. All rights reserved.