Highlights
- •MtDNA suggest a pre/post Columbian genetic continuity in the Colombian Andes.
- •Y-chromosome diversity follows a clinal gradient in the studied region.
- •Sex-biased/male-driven admixture process, involving Pijao women with European men.
- •Admixed closer to Indigenous resguardos have a higher Native American ancestry.
Abstract
Andean populations have variable degrees of Native American and European ancestry,
representing an opportunity to study admixture dynamics in the populations from Latin
America (also known as Hispanics). We characterized the genetic structure of two indigenous
(Nasa and Pijao) and three admixed (Ibagué, Ortega and Planadas) groups from Tolima,
in the Colombian Andes. DNA samples from 348 individuals were genotyped for six mitochondrial
DNA (mtDNA), seven non-recombining Y-chromosome (NRY) region and 100 autosomal ancestry
informative markers. Nasa and Pijao had a predominant Native American ancestry at
the autosomal (92%), maternal (97%) and paternal (70%) level. The admixed groups had
a predominant Native American mtDNA ancestry (90%), a substantial frequency of European
NRY haplotypes (72%) and similar autosomal contributions from Europeans (51%) and
Amerindians (45%). Pijao and nearby Ortega were indistinguishable at the mtDNA and
autosomal level, suggesting a genetic continuity between them. Comparisons with multiple
Native American populations throughout the Americas revealed that Pijao, had close
similarities with Carib-speakers from distant parts of the continent, suggesting an
ancient correlation between language and genes. In summary, our study aimed to understand
Hispanic patterns of migration, settlement and admixture, supporting an extensive
contribution of local Amerindian women to the gene pool of admixed groups and consistent
with previous reports of European-male driven admixture in Colombia.
Keywords
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References
- Geographic patterns of genome admixture in Latin American Mestizos.PLoS Genet. 2008; 4: 1-9
- Genetic variation and population structure in native americans.PLoS Genet. 2007; 3: e185
- Genetic demography of Antioquia (Colombia) and the Central Valley of Costa Rica.Hum. Genet. 2003; 112: 534-541
- Strong amerind/white sex bias and a possible sephardic contribution among the founders of a population in Northwest Colombia.Am. J. Hum. Genet. 2000; 67: 1287-1295
- Admixture dynamics in hispanics: a shift in the nuclear genetic ancestry of a South American population isolate.Proc. Natl. Acad. Sci. 2006; 103: 7234-7239
- Two novel LKB1 mutations in Colombian Peutz-Jeghers syndrome patients.Clin. Genet. 2009; 75: 304-306
- An association study of bipolar mood disorder (type I) with the 5-HTTLPR serotonin transporter polymorphism in a human population isolate from Colombia.Neurosci. Lett. 2000; 292: 199-202
- Germline mutations in PALB2, BRCA1, and RAD51C, which regulate DNA recombination repair, in patients with gastric cancer.Gastroenterology. 2017; 152 (e6): 983-986
- Admixture mapping comes of age.Ann. Rev. Genom. Hum. Genet. 2010; 11: 65-89
- The Evolution and Genetics of Latin American Populations.Cambridge University Press, 2002
- Examination of ancestry and ethnic affiliation using highly informative diallelic DNA markers: application to diverse and admixed populations and implications for clinical epidemiology and forensic medicine.Hum. Genet. 2005; 118: 382-392
- Population structure, stepwise mutations, heterozygote deficiency and their implications in DNA forensics.Heredity. 1995; 74: 274
- Ciencias forenses y antropología forense en el posconflicto colombiano.Revista Criminalidad. 2015; 57: 119-134
- La colonización española en el Tolima, siglos 16 y 17.Funcol-Cuadernos del Jaguar, Santa Fe de Bogotá, D.C1992
- Etnología y conquista del Tolima y la hoya del Quindío.Quimbayas Py, Ibagué1950
- The 8q24 rs6983267G variant is associated with increased thyroid cancer risk.Endocr. Relat. Cancer. 2015; 22: 841-849
- The HABP2 G534E polymorphism does not increase nonmedullary thyroid cancer risk in hispanics.Endocr. Connect. 2016; 5: 123-127
- Clinical features of Hispanic thyroid cancer cases and the role of known genetic variants on disease risk.Medicine (Baltimore). 2016; 95: e4148
- Uniparental genetic markers in South Amerindians.Genet. Mol. Biol. 2012; 35: 365-387
- Biological relationship between Central and South American Chibchan speaking populations: evidence from mtDNA.Am. J. Phys. Anthropol. 2007; 133: 753-770
- Genetic make up and structure of Colombian populations by means of uniparental and biparental DNA markers.Am. J. Phys. Anthropol. 2010; 143: 13-20
- Admixture and population structure in Mexican-Mestizos based on paternal lineages.J. Hum. Genet. 2012;
- Inferring continental ancestry of argentineans from autosomal, y-chromosomal and mitochondrial DNA.Ann. Hum. Genet. 2010; 74: 65-76
- Y chromosome haplogroup diversity in a Mestizo population of Nicaragua.Forensic Sci. Int.: Genet. 2012; 0
- The multiethnic ancestry of Bolivians as revealed by the analysis of Y-chromosome markers.Forensic Sci. Int.: Genet. 2015; 14: 210-218
- Hierarchical Y-SNP assay to study the hidden diversity and phylogenetic relationship of native populations in South America.Forensic Sci. Int. Genet. 2011; 5: 100-104
- Distribution of Y chromosomes among native North Americans: a study of Athapaskan population history.Am. J. Phys. Anthropol. 2008; 137: 412-424
- Male lineages in South American native groups: evidence of M19 traveling south.Am. J. Phys. Anthropol. 2011; 146: 188-196
- Colombia’s racial crucible: Y chromosome evidence from six admixed communities in the Department of Bolivar.Annal. Hum. Biol. 2014; 41: 453-459
- The genetic legacy of religious diversity and intolerance: paternal lineages of christians, jews, and muslims in the iberian peninsula.Am. J. Hum. Genet. 2008; 83: 725-736
- Int. HapMap Proj. Nat. 2003; 426: 789-796
- Founder motochondrial haplotypes in amerindian populations.Am. J. Hum. Genet. 1994; 54: 27-33
- Mitochondrial DNA polymorphisms in Chilean aboriginal populations: implications for the peopling of the Southern.Am. J. Phys. Anthropol. 2000; 113: 19-29
- A mtDNA analysis in ancient Basque populations: implications for haplogroup V as a marker for a major Palaeolithic expansion from southwestern Europe.Am. J. Hum. Genet. 1999; 65: 199-207
- mtDNA affinities of the peoples of North-Central Mexico.Am. J. Hum. Genet. 2000; 66: 989-998
- A nomenclature system for the tree of human Y-chromosomal binary haplogroups.Genome Res. 2002; 12: 339-348
- New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree.Genome Res. 2008;
- Development of a panel of genome-wide ancestry informative markers to study admixture throughout the americas.PLoS Genet. 2012; 8e1002554
- PLINK: a tool set for whole-genome association and population-based linkage analyses.Am. J. Hum. Genet. 2007; 81: 559-575
- R: A Language and Environment for Statistical Computing..R Foundation for Statistical Computing, Vienna, Austria2014
- Molecular Evolutionary Genetics.Columbia University Press, New York, NY, USA1987
- Arlequin (version 3.0): an integrated software package for population genetics data analysis.Evol. Bioinform. Online. 2005; 1: 47-50
- APE: analyses of phylogenetics and evolution in R language.Bioinformatics. 2004; 20: 289-290
- GenAlEx 6.5: genetic analysis in excel. Population genetic software for teaching and research – an update.Bioinformatics. 2012;
- Genalex 6: genetic analysis in excel. Population genetic software for teaching and research.Mol. Ecol. Notes. 2006; 6: 288-295
- Inference of population structure using multilocus genotype data.Genetics. 2000; 155: 945-959
- Detecting the number of clusters of individuals using the software structure: a simulation study.Mol. Ecol. 2005; 14: 2611-2620
- Structure harvester: a website and program for visualizing structure output and implementing the Evanno method.Conserv. Genet. Resour. 2012; 4: 359-361
- CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure.Bioinformatics. 2007; 23: 1801-1806
- Distruct: a program for the graphical display of population structure.Mol. Ecol. Notes. 2004; 4: 137-138
- Ancient admixture in human history.Genetics. 2012;
- Human ancestry correlates with language and reveals that race is not an objective genomic classifier.Sci. Rep. 2017; 7: 1572
- A note on Panche, Pijao, pantagora (Palenque), Colima and Muzo.Int. J. Am. Ling. 1973; 39: 47-51
- Datos antropológicos sobre los Pijao.Revista Colombiana de Antropologia. 1965; 12: 357-387
- Population structure in admixed populations: effect of admixture dynamics on the pattern of linkage disequilibrium.Am. J. Hum. Genet. 2001; 68: 198-207
- Forensic Archaeology and Human Rights Violations. Charles C. Thomas, Springfield, Illinois –USA2007
Article info
Publication history
Published online: June 06, 2018
Accepted:
June 5,
2018
Received in revised form:
June 5,
2018
Received:
February 20,
2018
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© 2018 Elsevier B.V. All rights reserved.