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Short communication| Volume 36, e1-e7, September 2018

Native American gene continuity to the modern admixed population from the Colombian Andes: Implication for biomedical, population and forensic studies

  • Angel A. Criollo-Rayo
    Affiliations
    Grupo de Citogenética, Filogenia y Evolución de Poblaciones, Facultad de Ciencias y Facultad de Ciencias de la Salud, Universidad del Tolima, Ibagué, Colombia
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  • Mabel Bohórquez
    Affiliations
    Grupo de Citogenética, Filogenia y Evolución de Poblaciones, Facultad de Ciencias y Facultad de Ciencias de la Salud, Universidad del Tolima, Ibagué, Colombia
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  • Author Footnotes
    1 In memoriam.
    Rodrigo Prieto
    Footnotes
    1 In memoriam.
    Affiliations
    Grupo de Citogenética, Filogenia y Evolución de Poblaciones, Facultad de Ciencias y Facultad de Ciencias de la Salud, Universidad del Tolima, Ibagué, Colombia
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  • Kimberley Howarth
    Affiliations
    Institute of Cancer and Genomics Sciences, University of Birmingham, UK
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  • Cesar Culma
    Affiliations
    Comite Regional Indígena del Tolima, Ibagué, Tolima, Colombia
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  • Angel Carracedo
    Affiliations
    Fundación Pública Galega de Medicina Xenómica (SERGAS)-CIBERER, Universidad de Santiago de Compostela, Santiago de Compostela, Spain

    Center of Excellence in Genomic Medicine Research, King Abdulaziz University, Jeddah, Saudi Arabia
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  • Ian Tomlinson
    Affiliations
    Institute of Cancer and Genomics Sciences, University of Birmingham, UK
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  • Author Footnotes
    2 These authors are senior authors in the study.
    Maria M. Echeverry de Polnaco
    Footnotes
    2 These authors are senior authors in the study.
    Affiliations
    Grupo de Citogenética, Filogenia y Evolución de Poblaciones, Facultad de Ciencias y Facultad de Ciencias de la Salud, Universidad del Tolima, Ibagué, Colombia
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  • Author Footnotes
    2 These authors are senior authors in the study.
    Luis G. Carvajal Carmona
    Correspondence
    Corresponding author at: Genome Center and Department of Biochemistry and Molecular Medicine, School of Medicine, University of California, Davis, UC Davis Genome Center, 451 Health Sciences Drive, Davis, CA 95616, USA.
    Footnotes
    2 These authors are senior authors in the study.
    Affiliations
    Grupo de Citogenética, Filogenia y Evolución de Poblaciones, Facultad de Ciencias y Facultad de Ciencias de la Salud, Universidad del Tolima, Ibagué, Colombia

    Fundación de Genética y Genómica, Medellin, Colombia

    Corporación Universitaria Remington, Medellin, Colombia

    Genome Center and Department of Biochemistry and Molecular Medicine, School of Medicine, University of California, Davis, GBSF, 451 Health Science Drive Davis, CA, 95616-8816, USA
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  • on behalf of the CHIBCHA Consortium
    Author Footnotes
    3 Members of CHIBCHA Consortium are listed in the Acknowledgements section.
  • Author Footnotes
    1 In memoriam.
    2 These authors are senior authors in the study.
    3 Members of CHIBCHA Consortium are listed in the Acknowledgements section.

      Highlights

      • MtDNA suggest a pre/post Columbian genetic continuity in the Colombian Andes.
      • Y-chromosome diversity follows a clinal gradient in the studied region.
      • Sex-biased/male-driven admixture process, involving Pijao women with European men.
      • Admixed closer to Indigenous resguardos have a higher Native American ancestry.

      Abstract

      Andean populations have variable degrees of Native American and European ancestry, representing an opportunity to study admixture dynamics in the populations from Latin America (also known as Hispanics). We characterized the genetic structure of two indigenous (Nasa and Pijao) and three admixed (Ibagué, Ortega and Planadas) groups from Tolima, in the Colombian Andes. DNA samples from 348 individuals were genotyped for six mitochondrial DNA (mtDNA), seven non-recombining Y-chromosome (NRY) region and 100 autosomal ancestry informative markers. Nasa and Pijao had a predominant Native American ancestry at the autosomal (92%), maternal (97%) and paternal (70%) level. The admixed groups had a predominant Native American mtDNA ancestry (90%), a substantial frequency of European NRY haplotypes (72%) and similar autosomal contributions from Europeans (51%) and Amerindians (45%). Pijao and nearby Ortega were indistinguishable at the mtDNA and autosomal level, suggesting a genetic continuity between them. Comparisons with multiple Native American populations throughout the Americas revealed that Pijao, had close similarities with Carib-speakers from distant parts of the continent, suggesting an ancient correlation between language and genes. In summary, our study aimed to understand Hispanic patterns of migration, settlement and admixture, supporting an extensive contribution of local Amerindian women to the gene pool of admixed groups and consistent with previous reports of European-male driven admixture in Colombia.

      Keywords

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